Index

_

__init__() (pysurfex.binary_input.InputDataToSurfexBinaries method) (pysurfex.binary_input.JsonInputData method) (pysurfex.binary_input.JsonInputDataFromFile method) (pysurfex.binary_input.JsonOutputData method) (pysurfex.binary_input.JsonOutputDataFromFile method) (pysurfex.binary_input.OutputDataFromSurfexBinaries method) (pysurfex.fa.Fa method) (pysurfex.file.AsciiSurfexFile method) (pysurfex.file.FaSurfexFile method) (pysurfex.file.ForcingFileNetCDF method) (pysurfex.file.NCSurfexFile method) (pysurfex.file.NetCDFSurfexFile method) (pysurfex.file.SurfexIO method) (pysurfex.file.SurfFileTypeExtension method) (pysurfex.file.TexteSurfexFile method) (pysurfex.forcing.SurfexForcing method) (pysurfex.forcing.SurfexNetCDFForcing method) (pysurfex.forcing.SurfexOutputForcing method) (pysurfex.geo.Cartesian method) (pysurfex.geo.ConfProj method) (pysurfex.geo.ConfProjFromHarmonie method) (pysurfex.geo.Geo method) (pysurfex.geo.IGN method) (pysurfex.geo.LonLatReg method) (pysurfex.geo.LonLatVal method) (pysurfex.geo.SurfexGeo method) (pysurfex.grib.Grib method), [1] (pysurfex.grib.Grib2Variable method) (pysurfex.interpolation.Interpolation method) (pysurfex.interpolation.ObsOperator method) (pysurfex.namelist.NamelistGenerator method) (pysurfex.namelist.NamelistGeneratorAssemble method) (pysurfex.namelist.NamelistGeneratorAssembleFromFiles method) (pysurfex.namelist.NamelistGeneratorFromNamelistFile method) (pysurfex.netcdf.Netcdf method) (pysurfex.netcdf.NetCDFFileVariable method) (pysurfex.netcdf.NetCDFReadVariable method) (pysurfex.obs.JsonObservationSet method) (pysurfex.obs.ObservationFromTitanJsonFile method) (pysurfex.obs.ObservationSet method) (pysurfex.obs.ObsSetFromVobs method), [1] (pysurfex.platform_deps.SystemFilePaths method) (pysurfex.platform_deps.SystemFilePathsFromFile method) (pysurfex.read.ConstantValue method) (pysurfex.read.ConvertedInput method) (pysurfex.read.Converter method) (pysurfex.read.ReadData method) (pysurfex.run.BatchJob method) (pysurfex.run.SURFEXBinary method) (pysurfex.timeseries.TimeSeries method) (pysurfex.titan.Blacklist method) (pysurfex.titan.Climatology method) (pysurfex.titan.Departure method) (pysurfex.titan.DomainCheck method) (pysurfex.titan.NoMeta method) (pysurfex.titan.Plausibility method) (pysurfex.titan.QualityControl method) (pysurfex.titan.Redundancy method) (pysurfex.titan.TitanDataSet method) (pysurfex.variable.Variable method) (pysurfex.verification.ObsDataFromSurfexConverter method), [1] (pysurfex.verification.VerifDataFromFile method) (pysurfex.verification.VerifVariable method), [1], [2], [3]

_check_sanity() (pysurfex.forcing.SurfexOutputForcing method) _define_forcing() (pysurfex.forcing.AsciiOutput method) (pysurfex.forcing.NetCDFOutput method)

A

absbias() (in module pysurfex.obsmon) add_data() (pysurfex.binary_input.JsonInputData method) alpha_grid_rot() (pysurfex.interpolation.Interpolation method) archive_files() (pysurfex.binary_input.JsonOutputData method) (pysurfex.binary_input.JsonOutputDataFromFile method) (pysurfex.binary_input.OutputDataFromSurfexBinaries method) archive_output_file() (pysurfex.file.SurfexSurfIO method) as_datetime() (in module pysurfex.datetime_utils)

as_datetime_args() (in module pysurfex.datetime_utils) as_datetime_string() (in module pysurfex.datetime_utils) as_timedelta() (in module pysurfex.datetime_utils) AsciiOutput (class in pysurfex.forcing) AsciiSurfexFile (class in pysurfex.file) assemble_namelist() (pysurfex.namelist.NamelistGeneratorAssemble method) Axis (class in pysurfex.netcdf) axis_types() (pysurfex.netcdf.NetCDFFileVariable method)

B

BatchJob (class in pysurfex.run) Blacklist (class in pysurfex.titan)

Buddy (class in pysurfex.titan) bufr2json() (in module pysurfex.cli) BufrObservationSet (class in pysurfex.bufr)

C

calculate_statistics() (in module pysurfex.obsmon) Cartesian (class in pysurfex.geo) clean_working_dir() (in module pysurfex.run) cli_merge_qc_data() (in module pysurfex.cli) cli_modify_forcing() (in module pysurfex.cli) cli_oi2soda() (in module pysurfex.cli) cli_set_domain_from_harmonie() (in module pysurfex.cli) cli_set_geo_from_obs_set() (in module pysurfex.cli) cli_set_geo_from_stationlist() (in module pysurfex.cli) cli_shape2ign() (in module pysurfex.cli) Climatology (class in pysurfex.titan) close_db() (in module pysurfex.obsmon) concat_datasets() (in module pysurfex.verification) concat_datasets_verif() (in module pysurfex.verification) ConfProj (class in pysurfex.geo) ConfProjFromHarmonie (class in pysurfex.geo)

ConstantValue (class in pysurfex.read) ConvertedInput (class in pysurfex.read) Converter (class in pysurfex.read) converter2ds() (in module pysurfex.verification) converter2harp() (in module pysurfex.verification) converter2harp_cli() (in module pysurfex.verification) converter_parse_options() (in module pysurfex.cmd_parsing) copy_input() (pysurfex.file.SurfexSurfIO method) create_db() (in module pysurfex.obsmon) create_forcing() (in module pysurfex.cli) create_lsm_file_assim() (in module pysurfex.cli) create_namelist() (in module pysurfex.cli) create_variable() (pysurfex.read.Converter method) create_working_dir() (in module pysurfex.run) cryoclim_pseudoobs() (in module pysurfex.cli) CryoclimObservationSet (class in pysurfex.pseudoobs)

D

datetimes() (pysurfex.netcdf.NetCDFFileVariable method) deaccumulate() (pysurfex.variable.Variable method) deep_update() (in module pysurfex.util) define_quality_control() (in module pysurfex.titan) Departure (class in pysurfex.titan)

dim_names() (pysurfex.netcdf.NetCDFFileVariable method) distance() (pysurfex.interpolation.Interpolation static method) DomainCheck (class in pysurfex.titan) ds2verif() (in module pysurfex.verification) dump_environ() (in module pysurfex.cli)

E

extend_macro() (pysurfex.binary_input.InputDataFromNamelist method)

F

Fa (class in pysurfex.fa) FaSurfexFile (class in pysurfex.file) field() (pysurfex.fa.Fa method) (pysurfex.file.FaSurfexFile method) (pysurfex.file.ForcingFileNetCDF method) (pysurfex.file.NCSurfexFile method) (pysurfex.file.NetCDFSurfexFile method) (pysurfex.file.SurfexIO method) (pysurfex.file.TexteSurfexFile method) (pysurfex.grib.Grib method) (pysurfex.netcdf.Netcdf method)

fill_field() (in module pysurfex.interpolation) finalize() (pysurfex.forcing.AsciiOutput method) (pysurfex.forcing.NetCDFOutput method) find_num() (pysurfex.namelist.NamelistGeneratorAssemble static method) first_guess_for_oi() (in module pysurfex.cli) FirstGuess (class in pysurfex.titan) flatten_list() (pysurfex.namelist.NamelistGeneratorAssemble static method) ForcingFileNetCDF (class in pysurfex.file) format_lat() (pysurfex.observation.Observation static method) format_lon() (pysurfex.observation.Observation static method) Fraction (class in pysurfex.titan) fromtimestamp() (in module pysurfex.datetime_utils)

G

generate_grib_id() (pysurfex.grib.Grib2Variable method) Geo (class in pysurfex.geo) get_basetime() (pysurfex.variable.Variable method) get_coord() (pysurfex.geo.IGN static method) get_data_set() (pysurfex.obs.ObservationSet method) get_datasources() (in module pysurfex.input_methods) get_decade() (in module pysurfex.datetime_utils) get_departure() (pysurfex.titan.Departure method) get_filehandler() (pysurfex.variable.Variable method) get_filename() (pysurfex.variable.Variable method) get_geo() (pysurfex.file.AsciiSurfexFile method) (pysurfex.file.NCSurfexFile method) get_geo_object() (in module pysurfex.geo) get_geo_object_from_json_file() (in module pysurfex.geo) get_multi_converters() (in module pysurfex.read) get_namelist() (pysurfex.namelist.NamelistGenerator method)

get_nml_value() (pysurfex.binary_input.InputDataFromNamelist static method) get_nml_value2() (pysurfex.binary_input.InputDataFromNamelist static method) get_nml_value_from_string() (pysurfex.binary_input.InputDataFromNamelist static method) get_obs() (pysurfex.obs.ObservationSet method) get_obs_value() (pysurfex.interpolation.ObsOperator method) get_pos_index() (pysurfex.obs.ObservationSet method) (pysurfex.titan.QCDataSet method) get_posid() (pysurfex.observation.Observation static method) get_stid_index() (pysurfex.obs.ObservationSet method) (pysurfex.titan.QCDataSet method) get_values() (pysurfex.titan.Departure method) Grib (class in pysurfex.grib) Grib2Variable (class in pysurfex.grib) grid2points() (in module pysurfex.interpolation) gridpp() (in module pysurfex.cli) guess_file_format() (in module pysurfex.file)

I

identifier() (pysurfex.geo.Geo method) IGN (class in pysurfex.geo) ign_mask() (pysurfex.geo.IGN static method) InputDataFromNamelist (class in pysurfex.binary_input) InputDataToSurfexBinaries (class in pysurfex.binary_input) inside_grid() (in module pysurfex.interpolation) inside_window() (pysurfex.bufr.BufrObservationSet static method)

interpolate() (pysurfex.interpolation.Interpolation method) interpolate_field() (pysurfex.file.SurfexIO static method) Interpolation (class in pysurfex.interpolation) is_accumulated() (pysurfex.grib.Grib2Variable method) is_identical() (pysurfex.geo.Geo method) is_in_grid() (pysurfex.interpolation.ObsOperator method) is_level() (pysurfex.netcdf.NetCDFFileVariable static method) isdatetime() (in module pysurfex.datetime_utils)

J

JsonInputData (class in pysurfex.binary_input) JsonInputDataFromFile (class in pysurfex.binary_input)

JsonObservationSet (class in pysurfex.obs) JsonOutputData (class in pysurfex.binary_input) JsonOutputDataFromFile (class in pysurfex.binary_input)

K

kwargs2converter() (in module pysurfex.read)

L

lats() (pysurfex.netcdf.NetCDFFileVariable method) levels() (pysurfex.netcdf.NetCDFFileVariable method) LoadFromFile (class in pysurfex.cmd_parsing)

LonLatReg (class in pysurfex.geo) LonLatVal (class in pysurfex.geo) lons() (pysurfex.netcdf.NetCDFFileVariable method) lower_case_namelist_dict() (pysurfex.namelist.NamelistGenerator static method)

M

Masterodb (class in pysurfex.run) matches() (pysurfex.grib.Grib2Variable method) matching_obs() (pysurfex.obs.ObservationSet method) matching_value() (pysurfex.binary_input.InputDataFromNamelist method) mean() (in module pysurfex.obsmon) members() (pysurfex.netcdf.NetCDFFileVariable method)

merge_json_qc_data_sets() (in module pysurfex.titan) MetFrostObservations (class in pysurfex.obs) mixing_ratio() (pysurfex.read.Converter static method) mixing_ratio_from_specific_humidity() (pysurfex.read.Converter static method) modify_forcing() (in module pysurfex.forcing) mslp2ps() (pysurfex.read.Converter static method)

N

NamelistGenerator (class in pysurfex.namelist) NamelistGeneratorAssemble (class in pysurfex.namelist) NamelistGeneratorAssembleFromFiles (class in pysurfex.namelist) NamelistGeneratorFromNamelistFile (class in pysurfex.namelist) NCSurfexFile (class in pysurfex.file) NetatmoObservationSet (class in pysurfex.obs)

Netcdf (class in pysurfex.netcdf) NetCDFFileVariable (class in pysurfex.netcdf) NetCDFOutput (class in pysurfex.forcing) NetCDFReadVariable (class in pysurfex.netcdf) NetCDFSurfexFile (class in pysurfex.file) NoMeta (class in pysurfex.titan)

O

obs2json() (in module pysurfex.cli) obs2vectors() (pysurfex.observation.Observation static method) ObsDataFromSurfexConverter (class in pysurfex.verification) Observation (class in pysurfex.observation) ObservationDataSetFromObsoul (class in pysurfex.obsoul) ObservationDataSetFromObsoulFile (class in pysurfex.obsoul) ObservationFromTitanJsonFile (class in pysurfex.obs)

ObservationSet (class in pysurfex.obs) ObsOperator (class in pysurfex.interpolation) ObsSetFromVobs (class in pysurfex.obs) offline() (in module pysurfex.cli) offsetaware() (in module pysurfex.datetime_utils) oi2soda() (in module pysurfex.netcdf) open_db() (in module pysurfex.obsmon) OutputDataFromSurfexBinaries (class in pysurfex.binary_input)

P

parse_args_bufr2json() (in module pysurfex.cmd_parsing) parse_args_concat_datasets() (in module pysurfex.verification) parse_args_converter2ds() (in module pysurfex.verification) parse_args_converter2harp() (in module pysurfex.verification) parse_args_create_forcing() (in module pysurfex.cmd_parsing) parse_args_create_namelist() (in module pysurfex.cmd_parsing) parse_args_ds2verif() (in module pysurfex.verification) parse_args_dump_environ() (in module pysurfex.cmd_parsing) parse_args_first_guess_for_oi() (in module pysurfex.cmd_parsing) parse_args_gridpp() (in module pysurfex.cmd_parsing) parse_args_lsm_file_assim() (in module pysurfex.cmd_parsing) parse_args_merge_qc_data() (in module pysurfex.cmd_parsing) parse_args_modify_forcing() (in module pysurfex.cmd_parsing) parse_args_obs2json() (in module pysurfex.cmd_parsing) parse_args_oi2soda() (in module pysurfex.cmd_parsing) parse_args_plot_points() (in module pysurfex.cmd_parsing) parse_args_qc2obsmon() (in module pysurfex.cmd_parsing) parse_args_set_geo_from_obs_set() (in module pysurfex.cmd_parsing) parse_args_set_geo_from_stationlist() (in module pysurfex.cmd_parsing) parse_args_shape2ign() (in module pysurfex.cmd_parsing) parse_args_surfex_binary() (in module pysurfex.cmd_parsing) parse_args_titan() (in module pysurfex.cmd_parsing) parse_args_variable() (in module pysurfex.cmd_parsing) parse_args_vfld2ds() (in module pysurfex.verification) parse_cryoclim_pseudoobs() (in module pysurfex.cmd_parsing) parse_filepattern() (in module pysurfex.util) parse_sentinel_obs() (in module pysurfex.cmd_parsing) parse_set_domain() (in module pysurfex.cmd_parsing) parse_timeseries2json() (in module pysurfex.cmd_parsing) perform_tests() (pysurfex.titan.QCDataSet method) (pysurfex.titan.TitanDataSet method) perturbed_offline() (in module pysurfex.cli)

PerturbedOffline (class in pysurfex.run) pgd() (in module pysurfex.cli) PGDFile (class in pysurfex.file) Plausibility (class in pysurfex.titan) plot_points() (in module pysurfex.cli) points() (pysurfex.fa.Fa method) (pysurfex.file.AsciiSurfexFile method) (pysurfex.file.FaSurfexFile method) (pysurfex.file.ForcingFileNetCDF method) (pysurfex.file.NCSurfexFile method) (pysurfex.file.NetCDFSurfexFile method) (pysurfex.file.SurfexIO method) (pysurfex.file.TexteSurfexFile method) (pysurfex.grib.Grib method) (pysurfex.netcdf.Netcdf method) (pysurfex.obs.ObservationSet method) populate_obsmon_db() (in module pysurfex.obsmon) populate_usage_db() (in module pysurfex.obsmon) prep() (in module pysurfex.cli) prepare_input() (pysurfex.binary_input.InputDataToSurfexBinaries method) (pysurfex.binary_input.JsonInputData method) (pysurfex.binary_input.JsonInputDataFromFile method) PREPFile (class in pysurfex.file) print_info() (pysurfex.read.ConstantValue method) (pysurfex.read.ConvertedInput method) (pysurfex.read.Converter method) (pysurfex.read.ReadData method) print_keys() (pysurfex.grib.Grib2Variable method) print_obs() (pysurfex.observation.Observation method) print_var() (pysurfex.file.SurfexFileVariable method) print_variable_info() (pysurfex.variable.Variable method) process_data() (pysurfex.binary_input.InputDataFromNamelist method) process_macro() (pysurfex.binary_input.InputDataFromNamelist method)

Q

qc2obsmon() (in module pysurfex.cli)

QCDataSet (class in pysurfex.titan) QualityControl (class in pysurfex.titan)

R

read() (pysurfex.file.AsciiSurfexFile method) (pysurfex.file.NetCDFSurfexFile method) (pysurfex.file.TexteSurfexFile method) read_cryoclim_nc() (in module pysurfex.netcdf) read_field() (pysurfex.file.ForcingFileNetCDF method) read_field_in_message() (pysurfex.grib.Grib static method) read_first_guess_netcdf_file() (in module pysurfex.netcdf) read_geo_info() (pysurfex.grib.Grib static method) read_macro_setting() (pysurfex.binary_input.InputDataFromNamelist method) read_sentinel_nc() (in module pysurfex.netcdf) read_time_step() (pysurfex.read.ConvertedInput method) (pysurfex.read.Converter method) (pysurfex.read.ReadData method) read_var_field() (pysurfex.variable.Variable method)

read_var_points() (pysurfex.variable.Variable method) read_variable() (pysurfex.variable.Variable method) read_vfld() (pysurfex.obs.ObsSetFromVobs static method) ReadData (class in pysurfex.read) Redundancy (class in pysurfex.titan) remove_existing_file() (in module pysurfex.util) rmse() (in module pysurfex.obsmon) rotate_geographic_wind() (pysurfex.variable.Variable method) run() (pysurfex.run.BatchJob method) run_gridpp() (in module pysurfex.cli) run_oi2soda() (in module pysurfex.cli) run_surfex_binary() (in module pysurfex.cli) run_time_loop() (in module pysurfex.forcing) run_titan() (in module pysurfex.cli)

S

saturation_mixing_ratio() (pysurfex.read.Converter static method) saturation_vapor_pressure() (pysurfex.read.Converter static method) save_as() (pysurfex.platform_deps.SystemFilePaths method) Sct (class in pysurfex.titan) sentinel_obs() (in module pysurfex.cli) SentinelObservationSet (class in pysurfex.pseudoobs) set_flags() (pysurfex.titan.QualityControl static method) set_forcing_config() (in module pysurfex.forcing) set_geo_from_stationlist() (in module pysurfex.cli) set_input() (pysurfex.titan.Blacklist method) (pysurfex.titan.Climatology method) (pysurfex.titan.DomainCheck method) (pysurfex.titan.FirstGuess method) (pysurfex.titan.Fraction method) (pysurfex.titan.NoMeta method) (pysurfex.titan.Plausibility method) (pysurfex.titan.QualityControl method) (pysurfex.titan.Redundancy method) (pysurfex.titan.Sct method) set_var() (pysurfex.variable.Variable method) shape2ign() (in module pysurfex.geo)

soda() (in module pysurfex.cli) specific_humidity_from_dewpoint() (pysurfex.read.Converter static method) specific_humidity_from_mixing_ratio() (pysurfex.read.Converter static method) subset() (pysurfex.geo.ConfProj method) (pysurfex.geo.SurfexGeo method) substitute() (pysurfex.binary_input.InputDataFromNamelist method) substitute_macros() (pysurfex.variable.Variable method) substitute_string() (pysurfex.platform_deps.SystemFilePaths static method) sum_neighbour_points() (in module pysurfex.interpolation) SURFEXBinary (class in pysurfex.run) SurfexFileVariable (class in pysurfex.file) SurfexForcing (class in pysurfex.forcing) SurfexGeo (class in pysurfex.geo) SurfexIO (class in pysurfex.file) SurfexNetCDFForcing (class in pysurfex.forcing) SurfexOutputForcing (class in pysurfex.forcing) SurfexSurfIO (class in pysurfex.file) SURFFile (class in pysurfex.file) SurfFileTypeExtension (class in pysurfex.file) symlink_input() (pysurfex.file.SurfexSurfIO method) SystemFilePaths (class in pysurfex.platform_deps) SystemFilePathsFromFile (class in pysurfex.platform_deps)

T

td2rh() (pysurfex.bufr.BufrObservationSet static method) test() (pysurfex.titan.Blacklist method) (pysurfex.titan.Buddy method) (pysurfex.titan.Climatology method) (pysurfex.titan.DomainCheck method) (pysurfex.titan.FirstGuess method) (pysurfex.titan.Fraction method) (pysurfex.titan.NoMeta method) (pysurfex.titan.Plausibility method) (pysurfex.titan.QualityControl method) (pysurfex.titan.Redundancy method) (pysurfex.titan.Sct method)

TexteSurfexFile (class in pysurfex.file) times() (pysurfex.netcdf.NetCDFFileVariable method) TimeSeries (class in pysurfex.timeseries) TimeSeriesFromConverter (class in pysurfex.timeseries) titan() (in module pysurfex.cli) TitanDataSet (class in pysurfex.titan)

U

units() (pysurfex.netcdf.NetCDFFileVariable method) update_namelist() (pysurfex.geo.Cartesian method) (pysurfex.geo.ConfProj method) (pysurfex.geo.IGN method) (pysurfex.geo.LonLatReg method) (pysurfex.geo.LonLatVal method) (pysurfex.geo.SurfexGeo method)

utcfromtimestamp() (in module pysurfex.datetime_utils)

V

Variable (class in pysurfex.variable) variable_parse_options() (in module pysurfex.cmd_parsing) vectors2obs() (pysurfex.observation.Observation static method)

VerifDataFromFile (class in pysurfex.verification) VerifVariable (class in pysurfex.verification) vfld2ds() (in module pysurfex.verification)

W

write_forcing() (pysurfex.forcing.SurfexOutputForcing method) write_formatted_array() (in module pysurfex.forcing) write_json() (pysurfex.timeseries.TimeSeries method)

write_json_file() (pysurfex.obs.ObservationSet method) write_obsmon_sqlite_file() (in module pysurfex.obsmon) write_output() (pysurfex.titan.QCDataSet method) write_proj_info() (pysurfex.geo.Geo method)